Cambridge Healthtech Institute’s 3rd Annual

Targeting KRAS and Other Small G Proteins

Drug Discovery against Cancer-Related GTPases

October 18 - 19, 2022 EDT

The drug discovery field for KRAS and its small G protein family members has been invigorated due to the FDA approval in May 2021 of Sotorasib, a small molecule, orally bioavailable drug for lung cancer that inhibits a specific mutated form of KRAS. Small G proteins have a complex structure and life-cycle, not easily amenable to conventional small molecule inhibitors. KRAS has a few mutated forms that are responsible for numerous types of cancer and has been an elusive cancer target for decades. Join Cambridge Healthtech Institute's Targeting KRAS and Other Small G Proteins conference to learn about progress and innovative approaches in addressing other ‘states’ and mutated forms of not only KRAS, but other Ras proteins as well.

Tuesday, October 18

Registration and Morning Coffee (Grand Ballroom Foyer)7:00 am

ROOM LOCATION: Back Bay B

KRAS INHIBITORS (G12C AND BEYOND)

7:55 amWelcome Remarks
8:00 am

Chairperson's Remarks

Daniel A. Erlanson, PhD, Senior Vice President, Innovation and Discovery, Frontier Medicines Corporation

8:05 am

KEYNOTE PRESENTATION: Fragment-Based Exploration of KRAS Pockets

Stephen W. Fesik, PhD, Professor of Biochemistry, Pharmacology, & Chemistry; Orrin H. Ingram II Chair in Cancer Research, Vanderbilt University

KRAS, a GTPase frequently mutated in cancer, has been considered undruggable due to the lack of suitable pockets. For over a decade we applied fragment-based methods to identify ligands for KRAS pockets that can be optimized using structure-based design. I review these efforts, which has led to Boehringer Ingelheim’s G12C inhibitor in clinical trials and lead molecules that offer the promise of additional clinically useful KRAS inhibitors.

9:05 am

RMC-9805, a First-in-Class, Orally Bioavailable, Tri-Complex Covalent KRASG12D(ON) Inhibitor

Les Burnett, PhD, Associate Director, Medicinal Chemistry, Revolution Medicines

KRASG12D mutant cancers represent a significant unmet medical need with 55,000 new diagnoses annually in the US largely in colorectal, pancreatic, and non-small cell lung cancers. RMC-9805, a potent, selective, orally bioavailable, covalent KRASG12D(ON) inhibitor, produced deep, durable suppression of tumor KRAS pathway activation in vivo following repeat oral administration. Profound tumor regressions were observed in KRASG12D mutant xenograft models in mice and all dose regimens were well tolerated.

Grand Opening Coffee Break in the Exhibit Hall with Poster Viewing (Grand Ballroom)9:35 am

10:25 am

Discovery of AZD4625: A Covalent Allosteric Inhibitor of KRAS G12C

Doyle Cassar, PhD, Senior Research Scientist, Medicinal Chemistry, AstraZeneca

Knowledge and structure-based design approaches derived a diverse series of covalent inhibitors that selectively target KRASG12C. Key to developing these compounds has been unique structural and conformational insights, identifying and overcoming cross-species PK differences, and solving significant synthetic challenges at scale. This talk will highlight our development of candidate drug AZD4625, a highly potent and selective inhibitor of KRASG12C with anticipated low clearance and high oral bioavailability profile in humans.

10:55 am

KRAS G12C Inhibitor: GDC-6036

Nicholas F. Endres, PhD, Senior Scientist, Biochemical & Cellular Pharmacology, Genentech, Inc.

Mutations in KRAS are common oncogenic drivers. GDC-6036 is an orally bioavailable, highly potent and selective KRAS G12C inhibitor. GDC-6036 demonstrates greater potency and selectivity compared with other KRAS G12C inhibitors in vitro, and complete tumor growth inhibition in multiple KRAS G12C-positive cell lines and in xenograft mouse models. We will present the research program that led to the discovery and optimization of GDC-6036, which is currently in clinical development.

Enjoy Lunch on Your Own11:25 am

INHIBITING OTHER GTPases OR RAS PARTNERS

1:25 pm

Chairperson's Remarks

Charles W. Johannes, PhD, Vice President, Exploratory Chemistry, FogPharma

1:30 pm

Design and Discovery of MRTX0902: A Potent, Selective, Brain-Penetrant, and Orally-Bioavailable Inhibitor of the SOS1:KRAS Protein-Protein Interaction

John M. Ketcham, PhD, Associate Director, Drug Discovery & Medicinal Chemistry, Mirati Therapeutics, Inc.

KRAS mutations are frequent driver mutations in human cancers. The guanine nucleotide exchange factor, SOS1, regulates the shift of KRAS from the GDP-loaded “off” state to its GTP-loaded “on” state. MRTX0902 is a potent, selective, brain penetrant, and orally bioavailable inhibitor of the SOS1:KRASG12C protein-protein interaction that causes tumor regressions when dosed with our KRASG12C inhibitor adagrasib in several preclinical models. The discovery and characterization of MRTX0902 will be presented.

2:00 pm

Probing and Overcoming KRASG12C Inhibitor Resistance

Melanie Wurm, PhD, Senior Scientist, Medicinal Chemistry, Boehringer Inghelheim

KRASG12C inhibitors deliver clinical benefit, most patients who achieved an objective response ultimately progressed. Multiple ongoing trials seek to augment responses to KRASG12C inhibitors through rational combination strategies, including the first-in-class pan-KRAS SOS1 inhibitor BI 1701963. Here we use different preclinical experimental approaches to interrogate KRASG12C inhibitor resistance mechanisms with the aim to identify strategies to overcome resistance. I will present: KRASG12C inhibitors deliver clinical benefit; combination strategies with first-in-class pan-KRAS SOS1 inhibitor BI 1701963; and identify strategies to overcome KRASG12C inhibitor resistance.

2:30 pm

Endogenous KRASG12C Degradation by VHL-MRTX849 PROTACs

Michael Bond, PhD, Postdoctoral Fellow, Laboratory of Kimberly Stegmaier, Dana Farber Cancer Institute

The discovery of covalent inhibitors of KRASG12C has reinvigorated the field of KRAS drug discovery. While these compounds have shown promising clinic results, we wanted to explore PROTAC-mediated degradation as a complementary strategy to modulate KRASG12C.  We report the development of LC-2, the first PROTAC capable of degrading endogenous KRASG12C.  LC-2 induces rapid, sustained KRASG12C degradation and suppresses MAPK signaling. LC-2 demonstrates that PROTAC-mediated degradation can attenuate oncogenic KRAS levels.

Refreshment Break in the Exhibit Hall with Poster Viewing (Grand Ballroom)3:00 pm

3:40 pm

Molecular Assemblies of KRAS and Mutants with SOS1

Arthur Laganowsky, PhD, Associate Professor, Chemistry, Texas A&M University

RAS proteins in the mitogen-activated protein kinase (MAPK) signaling pathway are the most frequently mutated oncogenes in cancer. Recent studies have shown that RAS expressed and purified from E. coli copurifies with different forms on guanosine nucleotides, including the 2’-deoxy form. Here, we use native mass spectrometry to study the biochemical properties of RAS bound to various nucleotides along with the molecular complexes they form with the guanine nucleotide exchange factor Son of Sevenless. We also find the intrinsic GTPase activity of oncogenic RAS mutants is dependent on the form of guanosine triphosphate.

4:10 pm

Chemical Strategies Against Mutant K-Ras Driven Cancer

Ziyang Zhang, PhD, Assistant Professor, Chemistry, University of California, Berkeley

Drugs that directly impede the function of driver oncogenes offer exceptional efficacy and therapeutic window for the treatment of cancer.  Despite the success targeting the G12C allele, targeted therapy for other hotspot mutants of KRAS have not been developed.  In this talk, I will discuss the discovery of agents that selectively target KRAS mutants beyond G12C, including small molecules that covalently reacts with KRAS G12S and KRAS G12R.

4:40 pm

SUMOylation Inhibition as a Synthetic Lethal Strategy for Cancers with KRAS Mutations

Jiayu Liao, PhD, Professor, Bioengineering, University of California, Riverside

The Synthetic lethality strategy has become a very attractive approach for “non-druggable” genes, such as KRAS and cMyc, in cancer treatments. We developed a new quantitative FRET (qFRET)-based HTS to discover a novel SUMOylation inhibitor that shows potent cell death-inducing activities with KRAS mutations at G12 or Q61 in cells and xenograft model. The SUMOylation inhibitor can serve as a chemical tool as well as a lead compound to test the new strategy for cancers, in which tumorigenesis is induced by those difficult-to-be targeted genes using other approaches.

Interactive Discussions5:10 pm

Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the conference website's Interactive Discussions page for a complete listing of topics and descriptions.

ROOM LOCATION: Back Bay B

IN-PERSON INTERACTIVE DISCUSSION:

KRAS and Beyond

Daniel A. Erlanson, PhD, Senior Vice President, Innovation and Discovery, Frontier Medicines Corporation

Charles W. Johannes, PhD, Vice President, Exploratory Chemistry, FogPharma

  • Understanding and overcoming resistance to G12C inhibitors  
  • Moving beyond G12C: G12D and pan-RAS inhibitors  
  • Macrocyclic inhibitors  
  • Can KRAS inhibitors be combined with other drugs?

Welcome Reception in the Exhibit Hall with Poster Viewing (Grand Ballroom)5:55 pm

Close of Day6:55 pm

Wednesday, October 19

Registration and Morning Coffee (Grand Ballroom Foyer)7:30 am

ROOM LOCATION: Back Bay B

NEW APPROACHES FOR INHIBITING SMALL G PROTEINS

7:55 am

Chairperson's Remarks

Micah Steffek, Principal Scientist, Biophysics, Denali Therapeutics

8:00 am

CLAMPing KRAS: Advancing Small Molecule Drug Discovery with Novel Antibody Chaperones

Christopher Davies, PhD, Senior Principal Scientific Researcher, Antibody Engineering, Genentech, Inc.

FDA approval of the first KRAS inhibitor has rejuvenated the field, however, drugging other KRAS mutants remains a challenge. We will describe Conformation Locking Antibodies for Molecular Probe discovery (CLAMPs) that recognize and induce a rare KRAS conformation. We will describe broad application of CLAMPs to detect inhibitor-bound KRAS in cells and tumors, serve as a structural chaperone, and enable a high-throughput screen to discover small-molecule ligands.

Presentation to be Announced8:30 am

9:00 am

A Covalent Fragment-Based Inhibitor of Ral Guanine Exchange Factor Rgl2 

Samy O. Meroueh, PhD, Associate Professor, Biochemistry & Molecular Biology, Indiana University

The Ral-GEF pathway is one of the three major K-RAS signaling pathways. Ral GTPases are difficult targets, but Rgl2, a Ral guanine exchange factor, has several cysteines on its surface.  We screened a library of cysteine electrophiles and identified fragments that inhibited Ral GTPase exchange by Rgl2. These allosteric covalent fragment inhibitors provide a starting point for the development of small-molecule covalent inhibitors to inhibit RAS signaling in animal models.

9:30 am

A Sos Proteomimetic as a Pan-Ras Inhibitor

Paramjit S. Arora, PhD, Professor, Chemistry, New York University

The cellular activity of Ras is modulated by its association with the guanine nucleotide exchange factor Sos, and the high-resolution crystal structure of the Ras–Sos complex provides a basis for the rational design of orthosteric Ras ligands. We constructed a synthetic Sos mimic that engages the wild-type and oncogenic forms of nucleotide-bound Ras and modulates downstream kinase signaling. Chemoproteomic studies illustrate that the proteomimetic engages Ras and other cellular GTPases. The proteomimetic resists proteolytic degradation and enters cells through macropinocytosis. As such, it is selectively toxic to cancer cells with up-regulated macropinocytosis, including those that feature oncogenic Ras mutations.

Coffee Break in the Exhibit Hall with Poster Viewing (Grand Ballroom)10:00 am

PLENARY KEYNOTE PROGRAM

ROOM LOCATION: Constitution A + B

11:00 am

Plenary Chairperson’s Remarks

An-Dinh Nguyen, Team Lead, Discovery on Target, Cambridge Healthtech Institute

11:05 am

PLENARY: Pirating Biology to Detect and Degrade Extracellular Proteins

James A. Wells, PhD, Professor, Departments of Pharmaceutical Chemistry and Cellular & Molecular Pharmacology, University of California, San Francisco

In contrast to intracellular PROTACs, approaches to degrade extracellular proteins are just emerging. I’ll describe our recent progress to harness natural mechanisms such as transmembrane E3 ligases to degrade extracellular proteins using fully genetically encoded bispecific antibodies we call AbTACs. We have also engineered a peptide ligase which can be tethered to cells to detect proteolysis events and target them with recombinant antibodies for greater selectivity for the tumor microenvironment.

11:50 am

PLENARY: Therapeutic Modalities for Neuroscience Diseases

Anabella Villalobos, PhD, Senior Vice President, Biotherapeutics & Medicinal Sciences, Biogen

Many effective medicines exist to treat neurological diseases, but medical need remains high. We have a unique multi-modality approach to discover novel therapies and our goal is to find the best modality regardless of biological target. With a multi-modality approach, we aim to expand target space, leverage synergies across modalities, and offer options to patients. Opportunities and challenges associated with small molecules, biologics, oligonucleotides, and gene therapy will be discussed.

Enjoy Lunch on Your Own12:35 pm

Refreshment Break in the Exhibit Hall with Poster Viewing (Grand Ballroom Foyer)1:25 pm

Close of Targeting KRAS and Other Small G Proteins Conference2:05 pm